raw total sequences:	10350351	# excluding supplementary and secondary reads
filtered sequences:	0
sequences:	10350351
is sorted:	1
1st fragments:	10350351
last fragments:	0
reads mapped:	9986618
reads mapped and paired:	0	# paired-end technology bit set + both mates mapped
reads unmapped:	363733
reads properly paired:	0	# proper-pair bit set
reads paired:	0	# paired-end technology bit set
reads duplicated:	0	# PCR or optical duplicate bit set
reads MQ0:	237912	# mapped and MQ=0
reads QC failed:	0
non-primary alignments:	10120518
supplementary alignments:	2488113
total length:	68605501784	# ignores clipping
total first fragment length:	68605501784	# ignores clipping
total last fragment length:	0	# ignores clipping
bases mapped:	68266187582	# ignores clipping
bases mapped (cigar):	67308692474	# more accurate
bases trimmed:	0
bases duplicated:	0
mismatches:	6115799705	# from NM fields
error rate:	9.086196e-02	# mismatches / bases mapped (cigar)
average length:	6628
average first fragment length:	6628
average last fragment length:	0
maximum length:	1323169
maximum first fragment length:	1323169
maximum last fragment length:	0
average quality:	32.0
insert size average:	0.0
insert size standard deviation:	0.0
inward oriented pairs:	0
outward oriented pairs:	0
pairs with other orientation:	0
pairs on different chromosomes:	0
percentage of properly paired reads (%):	0.0